Workflow notebooks

Modified

27 October 2026

106 working research notebooks, grouped by the folder they live in. The number is the notebook’s own prefix and orders the notebooks within a folder, so 01 in 10_METEO/30_PRODUCTS is the incoming shortwave product. A folder whose notebooks have no dependency order does not number them, so the column is empty there. Outputs are shown exactly as committed in the notebook; the notebooks are not re-executed at build time.

00_L0_CHECKS

00_L0_CHECKS/IRGA72

#	Notebook	File
01	Merge IRGA72 Level-0 output (2016-2026.09)	`01_IRGA72-L0_merge_output_to_parquet_2016-2026.09.ipynb`
03	Fluxes L0 checks IRGA72 (2016-2026.09)	`03_IRGA72-L0_check_fluxes_2016-2026.09.ipynb`
04	Wind direction checks L0 fluxes IRGA72 (2016-2026.09)	`04_IRGA72-L0_check_winddir_2016-2026.09.ipynb`
05	Time lag checks L0 fluxes IRGA72 (2016-2026.09)	`05_IRGA72-L0_check_timelags_2016-2026.09.ipynb`

00_L0_CHECKS/IRGA75

#	Notebook	File
11	Merge L0 output (IRGA75, 2004-2017, 2019)	`11_IRGA75-L0_merge_output_to_parquet_2005-2017_2019.ipynb`
13	Fluxes L0 checks (IRGA75, 2004-2017, 2019)	`13_IRGA75-L0_check_fluxes.ipynb`
14	Wind direction checks L0 fluxes (IRGA75, 2004-2017, 2019)	`14_IRGA75-L0_check_winddir.ipynb`
15	Time lag checks L0 fluxes IRGA75 (IRGA75, 2004-2017, 2019)	`15_IRGA75-L0_check_timelags.ipynb`

10_METEO

10_METEO/10_REFERENCE

#	Notebook	File
	MeteoSwiss reference meteorology: Lägern (LAE), 2004 to September 2026	`MeteoSwiss_LAE_2004-2026.09.ipynb`
	MeteoSwiss reference precipitation — Ehrendingen (OED), 2004-2025	`MeteoSwiss_OED_PREC_2004-2025.ipynb`
	MeteoSwiss regional reference precipitation — station ensemble around CH-LAE, 2004-2025	`MeteoSwiss_REGIONAL_PREC_2004-2025.ipynb`

10_METEO/20_SCREENING

#	Notebook	File
	MeteoScreening from database (InfluxDB)	`DatabaseInfluxStepwiseMeteoScreening.ipynb`

10_METEO/20_SCREENING/G

#	Notebook	File
	MeteoScreening from database (influxdb)	`G_FF1_0.05_1_2021-2025.ipynb`
	MeteoScreening from database (influxdb)	`G_FF1_0.05_2_2021-2025.ipynb`

10_METEO/20_SCREENING/LW_IN

#	Notebook	File
	LW_IN_T1_47_1_2022-2023	`LW_IN_T1_47_1_2022-2023.ipynb`
	LW_IN_T1_47_1_2025	`LW_IN_T1_47_1_2025.ipynb`
	MeteoScreening from database (InfluxDB)	`LW_IN_T1_47_1_2026.09.ipynb`

10_METEO/20_SCREENING/LW_OUT

#	Notebook	File
	MeteoScreening from database (influxdb)	`LW_OUT_T1_47_1_2020-2025.ipynb`

10_METEO/20_SCREENING/NETRAD

#	Notebook	File
	NETRAD_NABEL_T1_49_1_2004-2018	`NETRAD_NABEL_T1_49_1_2004-2018.ipynb`

10_METEO/20_SCREENING/PA

#	Notebook	File
	PA_NABEL_H1_2_1_2004-2018	`PA_NABEL_H1_2_1_2004-2018.ipynb`
	PA_T1_47_1_2022-2023	`PA_T1_47_1_2022-2023.ipynb`
	PA_T1_47_1_2025	`PA_T1_47_1_2025.ipynb`
	MeteoScreening from database (InfluxDB)	`PA_T1_47_1_2026.09.ipynb`

10_METEO/20_SCREENING/PPFD_IN

#	Notebook	File
	PPFD_IN_T1_47_1_2022-2023	`PPFD_IN_T1_47_1_2022-2023.ipynb`
	PPFD_IN_T1_47_1_2025	`PPFD_IN_T1_47_1_2025.ipynb`
	MeteoScreening from database (InfluxDB)	`PPFD_IN_T1_47_1_2026.09.ipynb`

10_METEO/20_SCREENING/PREC

#	Notebook	File
	PREC_NABEL_TOT_T1_47_1_2004-2018	`PREC_NABEL_TOT_T1_47_1_2004-2018.ipynb`
	MeteoScreening `PREC_TOT_T1_47_1` (2020-2025) from database (influxdb)	`PREC_TOT_T1_47_1_2020-2025.ipynb`

10_METEO/20_SCREENING/RH

#	Notebook	File
	RH_NABEL_T1_49_1_2004-2018	`RH_NABEL_T1_49_1_2004-2018.ipynb`
	RH_T1_47_1_2022-2023	`RH_T1_47_1_2022-2023.ipynb`
	RH_T1_47_1_2025	`RH_T1_47_1_2025.ipynb`
	MeteoScreening from database (InfluxDB)	`RH_T1_47_1_2026.09.ipynb`

10_METEO/20_SCREENING/SWC

#	Notebook	File
	MeteoScreening `SWC_FF1_0.05_1` (2020-2025) from database (influxdb)	`SWC_FF1_0.05_1_2020-2025.ipynb`
	MeteoScreening `SWC_FF1_0.1_1` (2020-2025) from database (influxdb)	`SWC_FF1_0.1_1_2020-2025.ipynb`
	MeteoScreening `SWC_FF1_0.2_1` (2020-2025) from database (influxdb)	`SWC_FF1_0.2_1_2020-2025.ipynb`
	MeteoScreening `SWC_FF1_0.3_1` (2020-2025) from database (influxdb)	`SWC_FF1_0.3_1_2020-2025.ipynb`
	MeteoScreening `SWC_FF1_0.5_1` (2020-2025) from database (influxdb)	`SWC_FF1_0.5_1_2020-2025.ipynb`
	Raw soil-moisture profile `SWC_FF1` (2020-2025) from database (influxdb)	`SWC_FF1_PROFILE_2020-2025.ipynb`

10_METEO/20_SCREENING/SW_IN

#	Notebook	File
	SW_IN_NABEL_T1_49_1_2004-2018	`SW_IN_NABEL_T1_49_1_2004-2018.ipynb`
	SW_IN_T1_47_1_2022-2023	`SW_IN_T1_47_1_2022-2023.ipynb`
	SW_IN_T1_47_1_2025	`SW_IN_T1_47_1_2025.ipynb`
	MeteoScreening from database (InfluxDB)	`SW_IN_T1_47_1_2026.09.ipynb`

10_METEO/20_SCREENING/SW_OUT

#	Notebook	File
	MeteoScreening from database (influxdb)	`SW_OUT_T1_47_1_2020-2025.ipynb`

10_METEO/20_SCREENING/TA

#	Notebook	File
	TA_NABEL_T1_49_1_2004-2018	`TA_NABEL_T1_49_1_2004-2018.ipynb`
	TA_T1_47_1_2022-2023	`TA_T1_47_1_2022-2023.ipynb`
	TA_T1_47_1_2025	`TA_T1_47_1_2025.ipynb`
	MeteoScreening from database (InfluxDB)	`TA_T1_47_1_2026.09.ipynb`

10_METEO/20_SCREENING/TS

#	Notebook	File
	MeteoScreening `TS_FF1_0.05_1` (2020-2025) from database (influxdb)	`TS_FF1_0.05_1_2020-2025.ipynb`
	MeteoScreening `TS_FF1_0.05_2` (2020-2025) from database (influxdb)	`TS_FF1_0.05_2_2020-2025.ipynb`
	MeteoScreening `TS_FF1_0.05_3` (2021-2025) from database (influxdb)	`TS_FF1_0.05_3_2021-2025.ipynb`
	MeteoScreening `TS_FF1_0.05_4` (2021-2025) from database (influxdb)	`TS_FF1_0.05_4_2021-2025.ipynb`
	MeteoScreening `TS_FF1_0.1_1` (2020-2025) from database (influxdb)	`TS_FF1_0.1_1_2020-2025.ipynb`
	MeteoScreening `TS_FF1_0.1_2` (2020-2025) from database (influxdb)	`TS_FF1_0.1_2_2020-2025.ipynb`
	MeteoScreening `TS_FF1_0.2_1` (2020-2025) from database (influxdb)	`TS_FF1_0.2_1_2020-2025.ipynb`
	MeteoScreening `TS_FF1_0.2_2` (2020-2025) from database (influxdb)	`TS_FF1_0.2_2_2020-2025.ipynb`
	MeteoScreening `TS_FF1_0.3_1` (2020-2025) from database (influxdb)	`TS_FF1_0.3_1_2020-2025.ipynb`
	MeteoScreening `TS_FF1_0.3_2` (2020-2025) from database (influxdb)	`TS_FF1_0.3_2_2020-2025.ipynb`
	MeteoScreening `TS_FF1_0.5_1` (2020-2025) from database (influxdb)	`TS_FF1_0.5_1_2020-2025.ipynb`
	MeteoScreening `TS_FF1_0.5_2` (2020-2025) from database (influxdb)	`TS_FF1_0.5_2_2020-2025.ipynb`
	MeteoScreening `TS_FF1_0.6_1` (2020-2025) from database (influxdb)	`TS_FF1_0.6_1_2020-2025.ipynb`

10_METEO/30_PRODUCTS

#	Notebook	File
01	Download and prepare `SW_IN` (2004-2026.09)	`01_METEO_SW_IN_2004-2026.09.ipynb`
02	Download and prepare `TA` (2004-2026.09)	`02_METEO_TA_2004-2026.09.ipynb`
03	Download and prepare `PPFD_IN` (2004-2026.09)	`03_METEO_PPFD_IN_2004-2026.09.ipynb`
04	Download and prepare `RH` (2004-2026.09)	`04_METEO_RH_2004-2026.09.ipynb`
05	Download and prepare `PA` (2005-2026.09)	`05_METEO_PA_2005-2026.09.ipynb`
06	Download and prepare `LW_IN` (2005-2026.09)	`06_METEO_LW_IN_2005-2026.09.ipynb`
07	Calculate `VPD` (2004-2026.09)	`07_METEO_VPD_2004-2026.09.ipynb`
08	Download and prepare `PREC` (2004-2025)	`08_METEO_PREC_2004-2025.ipynb`
09	Download and prepare `SWC` for the `FF1` soil profile (2004-2025)	`09_METEO_SWC_FF1_2004-2025.ipynb`
10	Download and prepare `TS` for the `FF1` soil profile (2004-2025)	`10_METEO_TS_FF1_2004-2025.ipynb`
11	Download and prepare `G` for the `FF1` soil heat flux plates (2004-2025)	`11_METEO_G_FF1_2004-2025.ipynb`
12	Download and prepare `SW_OUT` (2005-2025)	`12_METEO_SW_OUT_2005-2025.ipynb`
13	Download and prepare `LW_OUT` (2005-2025)	`13_METEO_LW_OUT_2005-2025.ipynb`
99	Merge the meteo products and overview (2004-2026.09)	`99_METEO_MERGED_2004-2026.09.ipynb`
	Radiation sensors: which series moved, and when	`RADIATION_SENSOR_CONTINUITY.ipynb`
	`TA` homogenisation: options for the 2016 sensor change	`TA_HOMOGENIZATION_OPTIONS.ipynb`
	Would XGBoost (or other ML) improve the `FF1` soil-temperature gap-fill?	`TS_FF1_GAPFILL_ML_COMPARISON.ipynb`
	Download the screened `TS` 30MIN record for the `FF1` soil profile (2004-2025)	`TS_FF1_SCREENED_30MIN_2004-2025.ipynb`

10_METEO/40_EXPORTS

#	Notebook	File
	EddyPro biomet file (2004-2026.09)	`EDDYPRO_BIOMET_CH-LAE_2004-2026.09.ipynb`

20_L1_FLUXES

20_L1_FLUXES/IRGA72

#	Notebook	File
99	Merge IRGA72 Level-1 fluxes (2016-2026.09)	`99_IRGA72_L1_MERGED_2016-2026.09.ipynb`

20_L1_FLUXES/IRGA75

#	Notebook	File
99	Merge data: IRGA75 (no self-heating correction, 2005-2017, 2019)	`99_IRGA75_L1_MERGED_noSHC_2004-2017_2019.ipynb`

30_FLUX_POST-PROCESSING_CHAIN

30_FLUX_POST-PROCESSING_CHAIN/IRGA72

#	Notebook	File
00	Flux post-processing chain: IRGA72 input, Level-1 fluxes and meteo (2016-2026.09)	`00_FPPC_IRGA72_INPUT_2016-2026.09.ipynb`
01	Flux post-processing chain: IRGA72 CO2 flux (2016-2026.09)	`01_FPPC_IRGA72_NEE_2016-2026.09.ipynb`
11	Flux post-processing chain: IRGA72 latent heat flux (2016-2026.09)	`11_FPPC_IRGA72_LE_2016-2026.09.ipynb`
15	Flux post-processing chain: sensible heat flux H (2016-2026.09)	`15_FPPC_IRGA72_H_2016-2026.09.ipynb`
99	Flux post-processing chain: merged IRGA72 results (2016-2026.09)	`99_FPPC_IRGA72_MERGED_2016-2026.09.ipynb`

30_FLUX_POST-PROCESSING_CHAIN/IRGA72/USTAR_DETECTION_2016-2024

#	Notebook	File
11	11_IRGA72_FluxProcessingChain_L3.2_NEE_QCF11_2016-2024	`11_IRGA72_FluxProcessingChain_L3.2_NEE_QCF11_2016-2024.ipynb`
13	Prepare data for REddyProc USTAR threshold detection	`13_IRGA72_PrepareForREddyProc.ipynb`

30_FLUX_POST-PROCESSING_CHAIN/IRGA75/10_SELF_HEATING_CORRECTION

#	Notebook	File
01	01_IRGA75_FPC_NEE-QCF11-L3.2_2016-2017	`01_IRGA75_FPC_NEE-QCF11-L3.2_2016-2017.ipynb`
11	11_IRGA72_FPC_NEE-QCF11-L3.2_2016-2017	`11_IRGA72_FPC_NEE-QCF11-L3.2_2016-2017.ipynb`
21	Merge IRGA75 (no self-heating correction) with IRGA72 data (2016-2017)	`21_MERGE_IRGA75-noSHC+IRGA72_NEE+LE_2016-2017.ipynb`
31	Calculate scaling factors for self-heating correction of open-path fluxes from parallel measurements (NEE)	`31_SelfHeatingCorrection_ScalingFactors_NEE.ipynb`
41	Apply self-heating correction to open-path fluxes (NEE, 2004-2019)	`41_SelfHeatingCorrection_Application_IRGA75_NEE_2004-2019.ipynb`

30_FLUX_POST-PROCESSING_CHAIN/IRGA75/20_USTAR_DETECTION

#	Notebook	File
01	01_IRGA75_FluxProcessingChain_L3.2_NEE_QCF10_2005-2019	`01_IRGA75_FluxProcessingChain_L3.2_NEE_QCF10_2005-2019.ipynb`
03	Prepare data for REddyProc USTAR threshold detection	`03_IRGA75_PrepareForREddyProc.ipynb`

30_FLUX_POST-PROCESSING_CHAIN/IRGA75/30_FPPC

#	Notebook	File
00	00 BEST A	`00 BEST A.ipynb`
00	00 BEST C	`00 BEST C.ipynb`
21	Merge IRGA75 fluxes (no self-heating correction, 2005-2017, 2019) + meteo 7 (2005-2019)	`21.3_FLUXES_L1_noSHC_IRGA75_and_METEO7.ipynb`
	A	`A.ipynb`
	C	`C.ipynb`

80_FINALIZE

#	Notebook	File
10	Finalize: all data in one collection (2004-2026.09)	`10_FLUXES_and_METEO_2004-2026.09.ipynb`
20	Release FP2026.1: CH-LAE fluxes and meteo, 2016-2026.09	`20_CH-LAE_FP2026.1_2016-2026.09.ipynb`

90_OVERVIEW

#	Notebook	File
	Meteo: Incoming shortwave radiation (SW_IN) (2006-2025)	`METEO_SW_IN.ipynb`
	Meteo: Air temperature (TA) (2005-2025)	`METEO_TA.ipynb`
	Meteo: Air temperature (VPD) (2005-2024)	`METEO_VPD.ipynb`
	Sonic anemometer data (2005-2024)	`Sonic_Anemometer.ipynb`